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Hartnell / Troughton episodes in the BBC Archives:

Pilot Episode 1
An Unearthly Child (4 eps) 1,2,3,4
The Dead Planet (7 eps) 1,2,3,4,5,6,7
The Edge of Destruction (2 eps) 1,2
Marco Polo (7 eps) MISSING: 1, 2, 3, 4, 5, 6, 7.
1. The Roof of the World
2. The Singing Sands
3. Five Hundred Eyes
4. The Wall of Lies
5. Rider From Shang-Tu
6. Mighty Kublai Kahn
7. Assassin at Peking

The Keys of Marinus (6 eps) 1,2,3,4,5,6
The Aztecs (4 eps) 1,2,3,4
The Sensorites (6 eps) 1,2,3,4,5,6
The Reign of Terror (6 eps) MISSING: 3, 4, 5, 6.
3. A Change of Identity
4. The Tyrant of France
5. A Bargain of Necessity
6. Prisoners of Conciergerie

Planet of Giants (3 eps) 1,2,3
The Dalek Invasion of Earth (6 eps) 1,2,3,4,5,6
The Rescue (2 eps) 1,2
The Romans (4 eps) 1,2,3,4
The Web Planet (6 eps) 1,2,3,4,5,6
The Crusade (4 eps) MISSING: 2,4.
2. The Knight of Jaffa
4. The War-Lords

The Space Museum (4 eps) 1,2,3,4
The Chase (6 eps) 1,2,3,4,5,6
The Time Meddler (4 eps) 1,2,3,4

Galaxy 4 (4 eps) MISSING: 1, 2, 3, 4.
1. Four Hundred Dawns
2. Trap of Steel
3. Airlock
4. The Exploding Planet

Mission to the Unknown (1 ep) MISSING: 1.

The Myth Makers (4 eps) MISSING: 1, 2, 3, 4.
1. Temple of Secrets
2. Small Prophet, Quick Return
3. Death of a Spy
4. Horse of Destruction

The Dalek Masterplan (12 eps) MISSING: 1, 2, 3, 4, 6, 7, 8, 9, 11, 12.
1. The Nightmare Begins
2. Day of Armageddon
3. Devil's Planet
4. The Traitors
6. Coronas of the Sun
7. The Feast of Steven
8. Volcano
9. Golden Death
11. The Abandoned Planet
12. The Destruction of Time

The Massacre (4 eps) MISSING: 1, 2, 3, 4.
1. War of God
2. The Sea Beggar
3. Priest of Death
4. Bell of Doom

The Ark (4 eps) 1,2,3,4
The Celestial Toymaker (4 eps) MISSING: 1, 2, 3.
1. The Celestial Toyroom
2. The Hall of Dolls
3. The Dancing Floor

NOTE: From this point on, all missing footage uses the title below, followed by the episode number.

The Gunfighters (4 eps) 1,2,3,4
The Savages (4 eps) MISSING: 1, 2, 3, 4.
The War Machines (4 eps) 1,2,3,4

The Smugglers (4 eps) MISSING: 1, 2, 3, 4.
The Tenth Planet (4 eps) MISSING: 4.
The Power of the Daleks (6 eps) MISSING: 1, 2, 3, 4, 5, 6.
The Highlanders (4 eps) MISSING: 1, 2, 3, 4.
The Underwater Menace (4 eps) MISSING: 1, 2, 4.
The Moonbase (4 eps) MISSING: 1, 3.
The Macra Terror (4 eps) MISSING: 1, 2, 3, 4.
The Faceless Ones (6 eps) MISSING: 2, 4, 5, 6.
The Evil of the Daleks (7 eps) MISSING: 1, 3, 4, 5, 6, 7.

The Tomb of the Cybermen (4 eps) 1,2,3,4
The Abominable Snowmen (6 eps) MISSING: 1, 3, 4, 5, 6.
The Ice Warriors (6 eps) MISSING: 2, 3.
The Enemy of the World (6 eps) MISSING: 1, 2, 4, 5, 6.
The Web of Fear (6 eps) MISSING: 2, 3, ,4 5, 6.
Fury from the Deep (6 eps) MISSING: 1, 2, 3, 4, 5, 6.
The Wheel in Space (6 eps) MISSING: 1, 2, 4, 5.

The Dominators (5 eps) 1,2,3,4,5
The Mind Robber (5 eps) 1,2,3,4,5
The Invasion (8 eps) MISSING: 1, 4.
The Krotons (4 eps) 1,2,3,4
The Seeds of Death (6 eps) 1,2,3,4,5,6
The Space Pirates (6 eps) MISSING: 1, 3, 4, 5, 6.
The War Games (10 eps) 1,2,3,4,5,6,7,8,9,10